STRINGSTRING
Psyr_2394 Psyr_2394 SdhA SdhA SdhB SdhB Psyr_0090 Psyr_0090 Psyr_0146 Psyr_0146 Psyr_2005 Psyr_2005 Psyr_2006 Psyr_2006 Psyr_5019 Psyr_5019 pckA pckA GltA GltA Psyr_5060 Psyr_5060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2394Succinate semialdehyde dehydrogenase. (463 aa)    
Predicted Functional Partners:
SdhA
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.943
SdhB
Succinate dehydrogenase subunit B.
   
 
 0.933
Psyr_0090
4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.917
Psyr_0146
4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.917
Psyr_2005
Succinate dehydrogenase subunit C.
   
 
  0.904
Psyr_2006
Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
 0.904
Psyr_5019
Acetyl-CoA hydrolase.
  
 
 0.903
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
  
 
 0.861
GltA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.856
Psyr_5060
Oxaloacetate decarboxylase, alpha subunit.
    
 0.828
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.