STRINGSTRING
Psyr_2528 Psyr_2528 Psyr_2527 Psyr_2527 Psyr_3469 Psyr_3469 Psyr_3820 Psyr_3820 Psyr_2659 Psyr_2659 Psyr_2792 Psyr_2792 Psyr_4585 Psyr_4585 Psyr_4373 Psyr_4373 Psyr_1695 Psyr_1695 Psyr_0371 Psyr_0371 Psyr_4304 Psyr_4304
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2528Polysaccharide deacetylase. (300 aa)    
Predicted Functional Partners:
Psyr_2527
GCN5-related N-acetyltransferase.
     
 0.796
Psyr_3469
Glycosyl transferase, family 2.
 
  
 0.771
Psyr_3820
Conserved domain protein.
  
     0.708
Psyr_2659
Protein of unknown function DUF955.
  
     0.705
Psyr_2792
Phage putative head morphogenesis protein, SPP1 gp7.
  
     0.676
Psyr_4585
Hypothetical protein.
  
     0.675
Psyr_4373
PAS.
  
     0.629
Psyr_1695
Conserved hypothetical protein.
  
     0.603
Psyr_0371
Conserved hypothetical protein.
  
     0.598
Psyr_4304
Endonuclease/exonuclease/phosphatase.
  
     0.577
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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