STRINGSTRING
Psyr_2859 Psyr_2859 Psyr_2946 Psyr_2946 amiF amiF Psyr_2860 Psyr_2860 Psyr_2858 Psyr_2858 Psyr_2857 Psyr_2857
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2859Isochorismatase hydrolase. (212 aa)    
Predicted Functional Partners:
Psyr_2946
4-oxalocrotonate tautomerase.
     
 0.770
amiF
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
 
 
 
 0.546
Psyr_2860
Hypothetical protein.
  
    0.522
Psyr_2858
2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
     0.518
Psyr_2857
Conserved hypothetical protein.
  
    0.475
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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