STRINGSTRING
Psyr_2970 Psyr_2970 Psyr_0854 Psyr_0854 Psyr_0855 Psyr_0855 Psyr_0853 Psyr_0853 Psyr_4606 Psyr_4606 Psyr_3829 Psyr_3829 Psyr_0560 Psyr_0560 Psyr_2967 Psyr_2967 Psyr_0683 Psyr_0683 Psyr_4334 Psyr_4334 Psyr_2968 Psyr_2968
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2970TPR repeat protein:TPR repeat protein. (364 aa)    
Predicted Functional Partners:
Psyr_0854
Conserved hypothetical protein.
  
     0.651
Psyr_0855
Conserved hypothetical protein.
  
     0.648
Psyr_0853
Conserved hypothetical protein.
 
     0.644
Psyr_4606
Outer membrane autotransporter barrel.
  
  
 0.612
Psyr_3829
Leucine-rich repeat protein.
  
     0.590
Psyr_0560
Conserved hypothetical protein.
  
     0.578
Psyr_2967
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
   0.558
Psyr_0683
NUDIX hydrolase.
  
     0.532
Psyr_4334
Conserved hypothetical protein.
 
   
 0.504
Psyr_2968
Hydrophobe/amphiphile efflux-1 HAE1.
       0.481
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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