STRINGSTRING
Psyr_3041 Psyr_3041 Psyr_2239 Psyr_2239 Psyr_3042 Psyr_3042 Psyr_4777 Psyr_4777 Psyr_3000 Psyr_3000 Psyr_3040 Psyr_3040 Psyr_2998 Psyr_2998 Psyr_2856 Psyr_2856
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3041Bacillolysin; Extracellular zinc metalloprotease. (356 aa)    
Predicted Functional Partners:
Psyr_2239
DNA/RNA non-specific endonuclease.
     0.715
Psyr_3042
Conserved hypothetical protein.
       0.701
Psyr_4777
Chitinase family 18.
   
  
 0.554
Psyr_3000
Methyltransferase, putative.
  
     0.494
Psyr_3040
Conserved hypothetical protein.
       0.448
Psyr_2998
Conserved hypothetical protein.
  
     0.438
Psyr_2856
Chitin-binding, domain 3.
   
  
 0.428
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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