STRINGSTRING
Psyr_3076 Psyr_3076 Psyr_3075 Psyr_3075 Psyr_3074 Psyr_3074 Psyr_3927 Psyr_3927 Psyr_3089 Psyr_3089 Psyr_0934 Psyr_0934 Psyr_3160 Psyr_3160 Psyr_0124 Psyr_0124 Psyr_3823 Psyr_3823 Psyr_1886 Psyr_1886 Psyr_3077 Psyr_3077
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3076Type I secretion system ATPase, HlyB. (720 aa)    
Predicted Functional Partners:
Psyr_3075
Type I secretion membrane fusion protein, HlyD.
 
 0.983
Psyr_3074
Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein.
 
  
 0.935
Psyr_3927
Siderophore-interacting protein.
   
   0.816
Psyr_3089
Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein.
 
  
 0.815
Psyr_0934
Type I secretion membrane fusion protein, HlyD.
 
 0.805
Psyr_3160
Type I secretion membrane fusion protein, HlyD.
 
 0.762
Psyr_0124
Hemolysin-type calcium-binding region.
 
  
 0.760
Psyr_3823
Hemolysin-type calcium-binding region:Putative Ig.
 
  
 0.752
Psyr_1886
Hemolysin-type calcium-binding region.
 
  
 0.725
Psyr_3077
Type I secretion outer membrane protein, TolC.
  
  
 0.710
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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