STRINGSTRING
Psyr_3116 Psyr_3116 Psyr_3115 Psyr_3115 Psyr_3117 Psyr_3117 Psyr_0823 Psyr_0823 PutA PutA mdcB mdcB Psyr_2056 Psyr_2056
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3116Transcriptional regulator, CdaR family. (363 aa)    
Predicted Functional Partners:
Psyr_3115
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.758
Psyr_3117
Lipoprotein, putative.
       0.522
Psyr_0823
Phosphotransferase system PTS, fructose-specific IIB subunit:PTS fructose IIC component; TC 4.A.2.1.1; TC 4.A.2.1.1.
  
   
 0.514
PutA
L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.431
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
  
     0.418
Psyr_2056
CHAD.
  
     0.412
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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