STRINGSTRING
Psyr_3162 Psyr_3162 Psyr_3161 Psyr_3161 Psyr_3163 Psyr_3163 Psyr_3159 Psyr_3159 Psyr_3059 Psyr_3059 Psyr_3983 Psyr_3983 Psyr_0124 Psyr_0124 Psyr_3074 Psyr_3074 Psyr_3823 Psyr_3823 Psyr_3160 Psyr_3160 Psyr_3089 Psyr_3089
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3162Metalloprotease inhibitor/calysin. (101 aa)    
Predicted Functional Partners:
Psyr_3161
Type I secretion system ATPase, PrtD.
  
  
 0.877
Psyr_3163
Epralysin, Metallo peptidase, MEROPS family M10B.
  
 
 0.863
Psyr_3159
Type I secretion outer membrane protein, TolC.
  
  
 0.862
Psyr_3059
Hemolysin-type calcium-binding region:Peptidase M10A and M12B, matrixin and adamalysin.
  
 
 0.742
Psyr_3983
Serralysin.
  
 
 0.742
Psyr_0124
Hemolysin-type calcium-binding region.
  
 
 0.624
Psyr_3074
Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein.
  
 
 0.624
Psyr_3823
Hemolysin-type calcium-binding region:Putative Ig.
  
 
 0.624
Psyr_3160
Type I secretion membrane fusion protein, HlyD.
  
  
 0.620
Psyr_3089
Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein.
  
 
 0.607
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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