STRINGSTRING
Psyr_3231 Psyr_3231 Psyr_3225 Psyr_3225 Psyr_3304 Psyr_3304 Psyr_3232 Psyr_3232 Psyr_4662 Psyr_4662 gmd gmd Psyr_0937 Psyr_0937 Psyr_1052 Psyr_1052 Psyr_3302 Psyr_3302 Psyr_0927 Psyr_0927 Psyr_3303 Psyr_3303
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3231Sugar transferase. (469 aa)    
Predicted Functional Partners:
Psyr_3225
Protein-tyrosine kinase.
 
  
 0.982
Psyr_3304
Lipopolysaccharide biosynthesis.
 
  
 0.974
Psyr_3232
Polysaccharide export protein.
  
  
 0.972
Psyr_4662
Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.971
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.968
Psyr_0937
Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.967
Psyr_1052
Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.967
Psyr_3302
Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.967
Psyr_0927
Hypothetical protein.
  
  
 0.950
Psyr_3303
Polysaccharide export protein.
  
  
 0.941
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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