Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0887 | Psyr_3429 | Psyr_0887 | Psyr_3429 | Sensory box protein. | CheW-like protein. | 0.764 |
Psyr_0887 | Psyr_3451 | Psyr_0887 | Psyr_3451 | Sensory box protein. | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | 0.644 |
Psyr_0887 | Psyr_3460 | Psyr_0887 | Psyr_3460 | Sensory box protein. | PAS/PAC sensor signal transduction histidine kinase. | 0.714 |
Psyr_0887 | Psyr_3486 | Psyr_0887 | Psyr_3486 | Sensory box protein. | Response regulator receiver:CheW-like protein. | 0.799 |
Psyr_0887 | Psyr_4762 | Psyr_0887 | Psyr_4762 | Sensory box protein. | Conserved hypothetical protein. | 0.423 |
Psyr_0887 | Psyr_5036 | Psyr_0887 | Psyr_5036 | Sensory box protein. | Response regulator receiver. | 0.492 |
Psyr_3429 | Psyr_0887 | Psyr_3429 | Psyr_0887 | CheW-like protein. | Sensory box protein. | 0.764 |
Psyr_3429 | Psyr_3451 | Psyr_3429 | Psyr_3451 | CheW-like protein. | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | 0.672 |
Psyr_3429 | Psyr_3460 | Psyr_3429 | Psyr_3460 | CheW-like protein. | PAS/PAC sensor signal transduction histidine kinase. | 0.747 |
Psyr_3429 | Psyr_3486 | Psyr_3429 | Psyr_3486 | CheW-like protein. | Response regulator receiver:CheW-like protein. | 0.945 |
Psyr_3429 | Psyr_4762 | Psyr_3429 | Psyr_4762 | CheW-like protein. | Conserved hypothetical protein. | 0.655 |
Psyr_3429 | Psyr_5036 | Psyr_3429 | Psyr_5036 | CheW-like protein. | Response regulator receiver. | 0.777 |
Psyr_3429 | fliE | Psyr_3429 | Psyr_3458 | CheW-like protein. | Flagellar hook-basal body complex protein FliE. | 0.471 |
Psyr_3451 | Psyr_0887 | Psyr_3451 | Psyr_0887 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | Sensory box protein. | 0.644 |
Psyr_3451 | Psyr_3429 | Psyr_3451 | Psyr_3429 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | CheW-like protein. | 0.672 |
Psyr_3451 | Psyr_3459 | Psyr_3451 | Psyr_3459 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | Helix-turn-helix, Fis-type. | 0.509 |
Psyr_3451 | Psyr_3460 | Psyr_3451 | Psyr_3460 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | PAS/PAC sensor signal transduction histidine kinase. | 0.851 |
Psyr_3451 | Psyr_3461 | Psyr_3451 | Psyr_3461 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | Helix-turn-helix, Fis-type. | 0.448 |
Psyr_3451 | Psyr_3486 | Psyr_3451 | Psyr_3486 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | Response regulator receiver:CheW-like protein. | 0.813 |
Psyr_3451 | Psyr_4762 | Psyr_3451 | Psyr_4762 | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E. | Conserved hypothetical protein. | 0.694 |
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