STRINGSTRING
Psyr_3460 Psyr_3460 Psyr_3459 Psyr_3459 Psyr_3451 Psyr_3451 Psyr_3462 Psyr_3462 Psyr_5036 Psyr_5036 Psyr_3429 Psyr_3429 Psyr_3461 Psyr_3461 Psyr_3486 Psyr_3486 fliE fliE Psyr_4762 Psyr_4762 Psyr_0887 Psyr_0887
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3460PAS/PAC sensor signal transduction histidine kinase. (404 aa)    
Predicted Functional Partners:
Psyr_3459
Helix-turn-helix, Fis-type.
 0.993
Psyr_3451
Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E.
 
 
 0.851
Psyr_3462
Conserved hypothetical protein.
     
 0.788
Psyr_5036
Response regulator receiver.
  
 
   0.780
Psyr_3429
CheW-like protein.
  
     0.747
Psyr_3461
Helix-turn-helix, Fis-type.
 
 0.739
Psyr_3486
Response regulator receiver:CheW-like protein.
 
 
 
 0.739
fliE
Flagellar hook-basal body complex protein FliE.
 
   0.738
Psyr_4762
Conserved hypothetical protein.
  
 
   0.719
Psyr_0887
Sensory box protein.
  
 
 0.714
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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