STRINGSTRING
Psyr_3497 Psyr_3497 Psyr_3498 Psyr_3498 Psyr_0548 Psyr_0548 Psyr_2496 Psyr_2496 Psyr_0511 Psyr_0511 Psyr_0763 Psyr_0763 Psyr_4446 Psyr_4446 Psyr_4386 Psyr_4386 Psyr_4963 Psyr_4963 plsB plsB Psyr_2359 Psyr_2359
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3497SH3-like region. (276 aa)    
Predicted Functional Partners:
Psyr_3498
Conserved hypothetical protein 730.
 
     0.605
Psyr_0548
Protein of unknown function DUF1249.
  
    0.545
Psyr_2496
Lipopolysaccharide core biosynthesis domain protein.
  
     0.497
Psyr_0511
Conserved hypothetical protein.
  
     0.464
Psyr_0763
Porin, LamB type.
  
     0.463
Psyr_4446
SmpA/OmlA.
  
     0.441
Psyr_4386
Conserved hypothetical protein.
  
     0.438
Psyr_4963
Hypothetical protein.
  
     0.436
plsB
Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
  
    0.428
Psyr_2359
Conserved hypothetical protein.
  
     0.413
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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