STRINGSTRING
Psyr_3549 Psyr_3549 Psyr_2497 Psyr_2497 Psyr_4302 Psyr_4302 Psyr_2037 Psyr_2037 Psyr_4943 Psyr_4943 Psyr_4409 Psyr_4409 Psyr_3260 Psyr_3260
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3549MscS Mechanosensitive ion channel. (803 aa)    
Predicted Functional Partners:
Psyr_2497
Lipoprotein, putative.
  
     0.522
Psyr_4302
Conserved hypothetical protein.
  
     0.510
Psyr_2037
Fimbrial biogenesis outer membrane usher protein.
  
     0.465
Psyr_4943
Peptidoglycan-binding LysM:Transport-associated.
  
     0.450
Psyr_4409
Multiple antibiotic resistance (MarC)-related protein.
  
    0.418
Psyr_3260
Conserved domain protein.
  
     0.405
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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