STRINGSTRING
Psyr_3551 Psyr_3551 algL algL Psyr_1057 Psyr_1057 Psyr_1058 Psyr_1058 Psyr_1060 Psyr_1060 Psyr_1054 Psyr_1054 Psyr_2056 Psyr_2056 Psyr_5024 Psyr_5024 Psyr_1597 Psyr_1597 Psyr_1062 Psyr_1062 Psyr_3862 Psyr_3862
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3551Arc-like DNA binding protein. (108 aa)    
Predicted Functional Partners:
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
   
 0.862
Psyr_1057
Alginate biosynthesis protein AlgX.
  
     0.774
Psyr_1058
Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis.
  
     0.774
Psyr_1060
Sel1-like repeat protein.
  
     0.774
Psyr_1054
Alginate biosynthesis protein AlgJ.
  
     0.769
Psyr_2056
CHAD.
  
     0.766
Psyr_5024
Conserved hypothetical protein.
  
     0.765
Psyr_1597
Conserved hypothetical protein.
  
     0.762
Psyr_1062
Alginate biosynthesis protein Alg8.
  
     0.758
Psyr_3862
Conserved hypothetical protein.
  
     0.755
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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