STRINGSTRING
Psyr_3566 Psyr_3566 Psyr_3568 Psyr_3568 Psyr_3567 Psyr_3567 Psyr_3569 Psyr_3569 Psyr_3563 Psyr_3563 Psyr_3570 Psyr_3570 Psyr_3564 Psyr_3564 argD-2 argD-2 Psyr_4715 Psyr_4715 Psyr_4714 Psyr_4714 astD astD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3566Transcriptional regulator, AraC family. (351 aa)    
Predicted Functional Partners:
Psyr_3568
Succinylglutamate desuccinylase/aspartoacylase.
 
    0.701
Psyr_3567
L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein.
  
  
 0.671
Psyr_3569
L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein.
       0.568
Psyr_3563
Arginine succinyltransferase.
 
  
 0.566
Psyr_3570
L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein.
  
  
 0.556
Psyr_3564
Arginine succinyltransferase.
 
  
 0.545
argD-2
Succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
  
 0.516
Psyr_4715
Sarcosine oxidase, alpha subunit, heterotetrameric; Belongs to the GcvT family.
 
     0.496
Psyr_4714
Sarcosine oxidase, delta subunit, heterotetrameric.
 
    0.488
astD
Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
  
  
 0.454
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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