STRINGSTRING
Psyr_3778 Psyr_3778 Psyr_4830 Psyr_4830 Psyr_4710 Psyr_4710 Psyr_4831 Psyr_4831 Psyr_4711 Psyr_4711 Psyr_3779 Psyr_3779 Psyr_3758 Psyr_3758 Psyr_3777 Psyr_3777 Psyr_0028 Psyr_0028 Psyr_4236 Psyr_4236 Psyr_4234 Psyr_4234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3778Substrate-binding region of ABC-type glycine betaine transport system. (337 aa)    
Predicted Functional Partners:
Psyr_4830
Binding-protein-dependent transport systems inner membrane component.
 
 0.996
Psyr_4710
Binding-protein-dependent transport systems inner membrane component.
 
 0.982
Psyr_4831
ABC transporter.
 
 0.978
Psyr_4711
Glycine betaine/L-proline transport ATP-binding subunit.
 
 0.971
Psyr_3779
GCN5-related N-acetyltransferase.
       0.590
Psyr_3758
Substrate-binding region of ABC-type glycine betaine transport system.
  
  
  0.520
Psyr_3777
Conserved hypothetical protein.
       0.516
Psyr_0028
Substrate-binding region of ABC-type glycine betaine transport system.
  
  
  0.499
Psyr_4236
Extracellular solute-binding protein, family 5.
  
  
  0.481
Psyr_4234
Extracellular solute-binding protein, family 5.
  
  
  0.478
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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