STRINGSTRING
Psyr_3788 Psyr_3788 Psyr_3789 Psyr_3789 Psyr_0855 Psyr_0855 Psyr_0853 Psyr_0853 Psyr_0556 Psyr_0556 Psyr_0640 Psyr_0640 Psyr_0854 Psyr_0854 Psyr_0560 Psyr_0560 Psyr_1674 Psyr_1674 Psyr_3787 Psyr_3787 Psyr_0036 Psyr_0036
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3788Conserved hypothetical protein 2001. (242 aa)    
Predicted Functional Partners:
Psyr_3789
Lipoprotein, putative.
 
     0.727
Psyr_0855
Conserved hypothetical protein.
  
     0.652
Psyr_0853
Conserved hypothetical protein.
  
     0.627
Psyr_0556
Histidine kinase, HAMP region.
  
     0.601
Psyr_0640
Lipoprotein, putative.
  
     0.599
Psyr_0854
Conserved hypothetical protein.
  
     0.584
Psyr_0560
Conserved hypothetical protein.
  
     0.579
Psyr_1674
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
     0.526
Psyr_3787
Conserved hypothetical protein.
       0.526
Psyr_0036
Protein of unknown function DUF883.
  
   
 0.520
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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