STRINGSTRING
Psyr_3854 Psyr_3854 pdxH pdxH Psyr_3852 Psyr_3852 tolB tolB Psyr_1352 Psyr_1352 Psyr_3893 Psyr_3893 Psyr_3855 Psyr_3855 Psyr_3431 Psyr_3431 Psyr_1760 Psyr_1760 pal pal rpmI rpmI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3854OmpA/MotB. (386 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.609
Psyr_3852
Lipoprotein SlyB, putative.
 
  
 0.602
tolB
TolB, N-terminal:TolB, N-terminal; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.577
Psyr_1352
Outer membrane protein (OmpH-like).
 
 
 0.535
Psyr_3893
OmpA/MotB.
  
     0.514
Psyr_3855
Beta-lactamase.
       0.486
Psyr_3431
OmpA/MotB.
  
 
 0.454
Psyr_1760
Peptidoglycan-binding LysM:SLT:MLTD_N.
 
 
 
 0.450
pal
OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.436
rpmI
LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.
  
   0.434
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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