Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_1473 | Psyr_2914 | Psyr_1473 | Psyr_2914 | DNA topoisomerase III. | ATP-dependent DNA helicase RecQ. | 0.683 |
Psyr_1473 | SbcB | Psyr_1473 | Psyr_4020 | DNA topoisomerase III. | Exodeoxyribonuclease I subunit C. | 0.577 |
Psyr_1473 | dinG | Psyr_1473 | Psyr_3856 | DNA topoisomerase III. | Helicase c2; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.689 |
Psyr_1473 | polA | Psyr_1473 | Psyr_0270 | DNA topoisomerase III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.679 |
Psyr_1473 | rpoA | Psyr_1473 | Psyr_4524 | DNA topoisomerase III. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.411 |
Psyr_1473 | sbcD | Psyr_1473 | Psyr_1715 | DNA topoisomerase III. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.540 |
Psyr_2244 | Psyr_2914 | Psyr_2244 | Psyr_2914 | DNA topoisomerase III. | ATP-dependent DNA helicase RecQ. | 0.683 |
Psyr_2244 | SbcB | Psyr_2244 | Psyr_4020 | DNA topoisomerase III. | Exodeoxyribonuclease I subunit C. | 0.577 |
Psyr_2244 | dinG | Psyr_2244 | Psyr_3856 | DNA topoisomerase III. | Helicase c2; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.689 |
Psyr_2244 | polA | Psyr_2244 | Psyr_0270 | DNA topoisomerase III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.679 |
Psyr_2244 | rpoA | Psyr_2244 | Psyr_4524 | DNA topoisomerase III. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.411 |
Psyr_2244 | sbcD | Psyr_2244 | Psyr_1715 | DNA topoisomerase III. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.551 |
Psyr_2914 | Psyr_1473 | Psyr_2914 | Psyr_1473 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase III. | 0.683 |
Psyr_2914 | Psyr_2244 | Psyr_2914 | Psyr_2244 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase III. | 0.683 |
Psyr_2914 | SbcB | Psyr_2914 | Psyr_4020 | ATP-dependent DNA helicase RecQ. | Exodeoxyribonuclease I subunit C. | 0.432 |
Psyr_2914 | dinG | Psyr_2914 | Psyr_3856 | ATP-dependent DNA helicase RecQ. | Helicase c2; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.622 |
Psyr_2914 | polA | Psyr_2914 | Psyr_0270 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.889 |
Psyr_2914 | rpoA | Psyr_2914 | Psyr_4524 | ATP-dependent DNA helicase RecQ. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.432 |
Psyr_2914 | rpoB | Psyr_2914 | Psyr_4555 | ATP-dependent DNA helicase RecQ. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.493 |
Psyr_2914 | sbcD | Psyr_2914 | Psyr_1715 | ATP-dependent DNA helicase RecQ. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.848 |
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