STRINGSTRING
Psyr_3864 Psyr_3864 Psyr_2577 Psyr_2577 Psyr_1106 Psyr_1106 Psyr_4730 Psyr_4730 Psyr_1039 Psyr_1039 Psyr_2581 Psyr_2581 Psyr_2142 Psyr_2142 Psyr_4731 Psyr_4731 Psyr_4826 Psyr_4826 Psyr_4729 Psyr_4729 Psyr_1040 Psyr_1040
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3864TonB-dependent siderophore receptor. (811 aa)    
Predicted Functional Partners:
Psyr_2577
Amino acid adenylation.
  
  
 0.761
Psyr_1106
FecR protein.
 
  
 0.702
Psyr_4730
FecR protein.
 
  
 0.698
Psyr_1039
FecR protein.
 
  
 0.686
Psyr_2581
FecR protein.
 
  
 0.673
Psyr_2142
FecR protein.
 
  
 0.662
Psyr_4731
Sigma-70 region 2:Sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.640
Psyr_4826
TonB-dependent receptor:TonB box, N-terminal.
  
  
 0.626
Psyr_4729
PepSY-associated TM helix.
 
  
 0.624
Psyr_1040
RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.619
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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