Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GltB | Psyr_2459 | Psyr_0411 | Psyr_2459 | Glutamate synthase (NADPH) large subunit. | Phosphoglycerate/bisphosphoglycerate mutase. | 0.495 |
GltB | Psyr_3899 | Psyr_0411 | Psyr_3899 | Glutamate synthase (NADPH) large subunit. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.681 |
GltB | tuf | Psyr_0411 | Psyr_4550 | Glutamate synthase (NADPH) large subunit. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.547 |
Psyr_1880 | Psyr_3416 | Psyr_1880 | Psyr_3416 | Cytochrome c, class I. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.830 |
Psyr_1880 | Psyr_3899 | Psyr_1880 | Psyr_3899 | Cytochrome c, class I. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.609 |
Psyr_1880 | tuf | Psyr_1880 | Psyr_4550 | Cytochrome c, class I. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.845 |
Psyr_2137 | Psyr_3899 | Psyr_2137 | Psyr_3899 | Molybdopterin molybdochelatase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.587 |
Psyr_2137 | fdhD | Psyr_2137 | Psyr_4945 | Molybdopterin molybdochelatase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | Formate dehydrogenase, subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family. | 0.506 |
Psyr_2457 | Psyr_2459 | Psyr_2457 | Psyr_2459 | Aminoglycoside phosphotransferase. | Phosphoglycerate/bisphosphoglycerate mutase. | 0.841 |
Psyr_2457 | Psyr_3899 | Psyr_2457 | Psyr_3899 | Aminoglycoside phosphotransferase. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.652 |
Psyr_2459 | GltB | Psyr_2459 | Psyr_0411 | Phosphoglycerate/bisphosphoglycerate mutase. | Glutamate synthase (NADPH) large subunit. | 0.495 |
Psyr_2459 | Psyr_2457 | Psyr_2459 | Psyr_2457 | Phosphoglycerate/bisphosphoglycerate mutase. | Aminoglycoside phosphotransferase. | 0.841 |
Psyr_2459 | Psyr_3899 | Psyr_2459 | Psyr_3899 | Phosphoglycerate/bisphosphoglycerate mutase. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.602 |
Psyr_3416 | Psyr_1880 | Psyr_3416 | Psyr_1880 | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Cytochrome c, class I. | 0.830 |
Psyr_3416 | Psyr_3899 | Psyr_3416 | Psyr_3899 | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.637 |
Psyr_3416 | tuf | Psyr_3416 | Psyr_4550 | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.785 |
Psyr_3898 | Psyr_3899 | Psyr_3898 | Psyr_3899 | Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily. | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.588 |
Psyr_3898 | Psyr_3900 | Psyr_3898 | Psyr_3900 | Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily. | Conserved hypothetical protein. | 0.426 |
Psyr_3899 | GltB | Psyr_3899 | Psyr_0411 | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Glutamate synthase (NADPH) large subunit. | 0.681 |
Psyr_3899 | Psyr_1880 | Psyr_3899 | Psyr_1880 | Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Cytochrome c, class I. | 0.609 |
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