STRINGSTRING
Psyr_3952 Psyr_3952 rnc rnc era era Psyr_3865 Psyr_3865 recO recO Psyr_1203 Psyr_1203 Psyr_2054 Psyr_2054 Psyr_3953 Psyr_3953 lepA lepA Psyr_0845 Psyr_0845 Psyr_0406 Psyr_0406
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3952Conserved hypothetical protein. (125 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.815
era
Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.803
Psyr_3865
Conserved hypothetical protein.
  
     0.753
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.634
Psyr_1203
Hypothetical protein.
  
     0.602
Psyr_2054
Protein of unknown function DUF58.
  
     0.571
Psyr_3953
Signal peptidase I, Serine peptidase, MEROPS family S26A; Belongs to the peptidase S26 family.
  
    0.563
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.558
Psyr_0845
Conserved hypothetical protein.
  
     0.524
Psyr_0406
Pilus assembly protein, PilQ.
  
   
 0.519
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.