STRINGSTRING
Psyr_3957 Psyr_3957 Psyr_3956 Psyr_3956 AlgU AlgU Psyr_3955 Psyr_3955 Psyr_4130 Psyr_4130 Psyr_2096 Psyr_2096 Psyr_0046 Psyr_0046 Psyr_1943 Psyr_1943 Psyr_1549 Psyr_1549 Psyr_3285 Psyr_3285 Psyr_4117 Psyr_4117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3957Anti sigma-E protein, RseA. (196 aa)    
Predicted Functional Partners:
Psyr_3956
Sigma E regulatory protein, MucB/RseB.
 
 
 0.993
AlgU
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.952
Psyr_3955
Peptidase S1, chymotrypsin:PDZ/DHR/GLGF; Belongs to the peptidase S1C family.
 
 
 0.870
Psyr_4130
Peptidase S1, chymotrypsin:PDZ/DHR/GLGF; Belongs to the peptidase S1C family.
 
 
 0.780
Psyr_2096
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.761
Psyr_0046
Conserved hypothetical protein.
  
     0.750
Psyr_1943
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.735
Psyr_1549
Lipoprotein, putative.
  
     0.730
Psyr_3285
Conserved hypothetical protein.
  
     0.729
Psyr_4117
Stringent starvation protein B.
    
 
 0.718
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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