STRINGSTRING
AlgU AlgU Psyr_3957 Psyr_3957 Psyr_3956 Psyr_3956 Psyr_0362 Psyr_0362 Psyr_0892 Psyr_0892 Psyr_1352 Psyr_1352 Psyr_1528 Psyr_1528 Psyr_3551 Psyr_3551 Psyr_3955 Psyr_3955 algL algL recO recO
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AlgURNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)    
Predicted Functional Partners:
Psyr_3957
Anti sigma-E protein, RseA.
  
 
 0.952
Psyr_3956
Sigma E regulatory protein, MucB/RseB.
 
 
 0.908
Psyr_0362
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.704
Psyr_0892
Sigma-70 region 2:Sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.685
Psyr_1352
Outer membrane protein (OmpH-like).
      
 0.615
Psyr_1528
Arc-like DNA binding protein.
      
 0.595
Psyr_3551
Arc-like DNA binding protein.
      
 0.595
Psyr_3955
Peptidase S1, chymotrypsin:PDZ/DHR/GLGF; Belongs to the peptidase S1C family.
     
 0.538
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
   
  
 0.507
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.502
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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