STRINGSTRING
Psyr_3968 Psyr_3968 Psyr_3967 Psyr_3967 Psyr_3966 Psyr_3966 Psyr_3969 Psyr_3969 Psyr_0898 Psyr_0898 Psyr_0900 Psyr_0900 Psyr_0899 Psyr_0899 Psyr_3112 Psyr_3112
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3968Protein of unknown function DUF112. (504 aa)    
Predicted Functional Partners:
Psyr_3967
Membrane protein TctB, putative.
 
  
 0.985
Psyr_3966
Uncharacterized protein UPF0065.
 
  
 0.980
Psyr_3969
Putative ammonia monooxygenase.
 
    0.884
Psyr_0898
TRAP dicarboxylate transporter, DctM subunit.
  
     0.586
Psyr_0900
TRAP dicarboxylate transporter- DctP subunit.
  
     0.570
Psyr_0899
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
     0.520
Psyr_3112
Putative ammonia monooxygenase.
 
    0.405
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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