STRINGSTRING
Psyr_3981 Psyr_3981 Psyr_3980 Psyr_3980 der der cmk cmk Psyr_1390 Psyr_1390 Psyr_3979 Psyr_3979 Psyr_3982 Psyr_3982 Psyr_5006 Psyr_5006 rlmL rlmL Psyr_0215 Psyr_0215 Psyr_2476 Psyr_2476
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3981Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. (230 aa)    
Predicted Functional Partners:
Psyr_3980
Hypothetical protein.
  
    0.750
der
Small GTP-binding protein protein domain:GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.676
cmk
Cytidylate kinase.
 
  
 0.591
Psyr_1390
RNA-binding S4.
  
     0.585
Psyr_3979
Conserved hypothetical protein.
       0.584
Psyr_3982
3-hydroxyacyl-CoA-acyl carrier protein transferase.
     
 0.544
Psyr_5006
HAD-superfamily hydrolase, subfamily IA, variant 3.
      0.496
rlmL
23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
 
 0.466
Psyr_0215
Exodeoxyribonuclease III xth.
  
    0.465
Psyr_2476
Exodeoxyribonuclease III.
  
    0.465
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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