STRINGSTRING
Psyr_4009 Psyr_4009 Psyr_4007 Psyr_4007 Psyr_4008 Psyr_4008 Psyr_2866 Psyr_2866 Psyr_2864 Psyr_2864 Psyr_2606 Psyr_2606 Psyr_2283 Psyr_2283 Psyr_2865 Psyr_2865 Psyr_2282 Psyr_2282 Psyr_2967 Psyr_2967 Psyr_2968 Psyr_2968
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4009RND efflux system, outer membrane lipoprotein, NodT. (486 aa)    
Predicted Functional Partners:
Psyr_4007
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.993
Psyr_4008
Hydrophobe/amphiphile efflux-1 HAE1.
 0.993
Psyr_2866
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.971
Psyr_2864
RND efflux system, outer membrane lipoprotein, NodT.
  
  
 
0.904
Psyr_2606
RND efflux system, outer membrane lipoprotein, NodT.
  
  
 
0.901
Psyr_2283
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.856
Psyr_2865
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.851
Psyr_2282
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.845
Psyr_2967
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.734
Psyr_2968
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.725
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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