STRINGSTRING
Psyr_4011 Psyr_4011 fadB fadB Psyr_4012 Psyr_4012 Psyr_4013 Psyr_4013 Psyr_0645 Psyr_0645 Psyr_2725 Psyr_2725 fadA fadA Psyr_3031 Psyr_3031 Psyr_0824 Psyr_0824 Psyr_2728 Psyr_2728 Psyr_1875 Psyr_1875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4011Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)    
Predicted Functional Partners:
fadB
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 0.995
Psyr_4012
Glutaconate CoA-transferase.
 
 
 0.932
Psyr_4013
Glutaconate CoA-transferase.
 
 
 0.932
Psyr_0645
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.921
Psyr_2725
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.918
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
  
0.917
Psyr_3031
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.916
Psyr_0824
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.908
Psyr_2728
Vanillin synthase / trans-feruloyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.837
Psyr_1875
Enoyl-CoA hydratase/isomerase.
  
 0.805
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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