STRINGSTRING
Psyr_4013 Psyr_4013 Psyr_4012 Psyr_4012 Psyr_4011 Psyr_4011 Psyr_3238 Psyr_3238 Psyr_2208 Psyr_2208 Psyr_4268 Psyr_4268 Psyr_4014 Psyr_4014 Psyr_3005 Psyr_3005 Psyr_4010 Psyr_4010 fadB fadB Psyr_2126 Psyr_2126
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4013Glutaconate CoA-transferase. (285 aa)    
Predicted Functional Partners:
Psyr_4012
Glutaconate CoA-transferase.
 0.999
Psyr_4011
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.932
Psyr_3238
3-oxoacid CoA-transferase.
  
 
 0.930
Psyr_2208
Amidase; Belongs to the amidase family.
     
  0.900
Psyr_4268
Amidase; Belongs to the amidase family.
     
  0.900
Psyr_4014
Regulatory protein, IclR.
 
  
 0.729
Psyr_3005
3-oxoadipate enol-lactonase.
 
  
 0.605
Psyr_4010
Citrate-proton symport.
  
  
 0.590
fadB
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
  
 0.589
Psyr_2126
4-carboxymuconolactone decarboxylase.
 
  
 0.570
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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