Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_1092 | Psyr_4140 | Permease YjgP/YjgQ. | Protein of unknown function DUF140. | 0.575 |
Psyr_1092 | Psyr_4146 | Permease YjgP/YjgQ. | ABC transporter. | 0.980 |
Psyr_1913 | Psyr_4138 | Sulfate transporter/antisigma-factor antagonist STAS. | Toluene tolerance. | 0.475 |
Psyr_1913 | Psyr_4139 | Sulfate transporter/antisigma-factor antagonist STAS. | Mce4/Rv3499c/MTV023.06c protein. | 0.647 |
Psyr_1913 | Psyr_4140 | Sulfate transporter/antisigma-factor antagonist STAS. | Protein of unknown function DUF140. | 0.635 |
Psyr_1913 | Psyr_4141 | Sulfate transporter/antisigma-factor antagonist STAS. | ABC transporter. | 0.653 |
Psyr_3452 | Psyr_4139 | Sulfate transporter/antisigma-factor antagonist STAS. | Mce4/Rv3499c/MTV023.06c protein. | 0.647 |
Psyr_3452 | Psyr_4140 | Sulfate transporter/antisigma-factor antagonist STAS. | Protein of unknown function DUF140. | 0.635 |
Psyr_3452 | Psyr_4141 | Sulfate transporter/antisigma-factor antagonist STAS. | ABC transporter. | 0.653 |
Psyr_4136 | Psyr_4137 | BolA-like protein; Belongs to the BolA/IbaG family. | Sulfate transporter/antisigma-factor antagonist STAS. | 0.620 |
Psyr_4136 | Psyr_4138 | BolA-like protein; Belongs to the BolA/IbaG family. | Toluene tolerance. | 0.666 |
Psyr_4136 | Psyr_4139 | BolA-like protein; Belongs to the BolA/IbaG family. | Mce4/Rv3499c/MTV023.06c protein. | 0.587 |
Psyr_4136 | Psyr_4140 | BolA-like protein; Belongs to the BolA/IbaG family. | Protein of unknown function DUF140. | 0.554 |
Psyr_4136 | Psyr_4141 | BolA-like protein; Belongs to the BolA/IbaG family. | ABC transporter. | 0.578 |
Psyr_4136 | Psyr_4142 | BolA-like protein; Belongs to the BolA/IbaG family. | KpsF/GutQ. | 0.456 |
Psyr_4137 | Psyr_4136 | Sulfate transporter/antisigma-factor antagonist STAS. | BolA-like protein; Belongs to the BolA/IbaG family. | 0.620 |
Psyr_4137 | Psyr_4138 | Sulfate transporter/antisigma-factor antagonist STAS. | Toluene tolerance. | 0.970 |
Psyr_4137 | Psyr_4139 | Sulfate transporter/antisigma-factor antagonist STAS. | Mce4/Rv3499c/MTV023.06c protein. | 0.983 |
Psyr_4137 | Psyr_4140 | Sulfate transporter/antisigma-factor antagonist STAS. | Protein of unknown function DUF140. | 0.982 |
Psyr_4137 | Psyr_4141 | Sulfate transporter/antisigma-factor antagonist STAS. | ABC transporter. | 0.984 |
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