Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0292 | Psyr_2098 | Psyr_0292 | Psyr_2098 | Porphobilinogen synthase; Belongs to the ALAD family. | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | 0.860 |
Psyr_0292 | cysG | Psyr_0292 | Psyr_3174 | Porphobilinogen synthase; Belongs to the ALAD family. | uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. | 0.894 |
Psyr_0292 | hemA | Psyr_0292 | Psyr_0948 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.868 |
Psyr_0292 | hemC | Psyr_0292 | Psyr_0062 | Porphobilinogen synthase; Belongs to the ALAD family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.995 |
Psyr_0292 | hemL | Psyr_0292 | Psyr_4342 | Porphobilinogen synthase; Belongs to the ALAD family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.991 |
Psyr_1794 | Psyr_1957 | Psyr_1794 | Psyr_1957 | Amino acid adenylation. | Amino acid adenylation. | 0.966 |
Psyr_1794 | Psyr_2611 | Psyr_1794 | Psyr_2611 | Amino acid adenylation. | Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.964 |
Psyr_1794 | Psyr_3927 | Psyr_1794 | Psyr_3927 | Amino acid adenylation. | Siderophore-interacting protein. | 0.687 |
Psyr_1794 | hemL | Psyr_1794 | Psyr_4342 | Amino acid adenylation. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.737 |
Psyr_1957 | Psyr_1794 | Psyr_1957 | Psyr_1794 | Amino acid adenylation. | Amino acid adenylation. | 0.966 |
Psyr_1957 | hemL | Psyr_1957 | Psyr_4342 | Amino acid adenylation. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.795 |
Psyr_2098 | Psyr_0292 | Psyr_2098 | Psyr_0292 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.860 |
Psyr_2098 | cysG | Psyr_2098 | Psyr_3174 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. | 0.957 |
Psyr_2098 | hemA | Psyr_2098 | Psyr_0948 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.726 |
Psyr_2098 | hemC | Psyr_2098 | Psyr_0062 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.981 |
Psyr_2098 | hemL | Psyr_2098 | Psyr_4342 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.725 |
Psyr_2611 | Psyr_1794 | Psyr_2611 | Psyr_1794 | Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family. | Amino acid adenylation. | 0.964 |
Psyr_2611 | hemL | Psyr_2611 | Psyr_4342 | Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.802 |
Psyr_3927 | Psyr_1794 | Psyr_3927 | Psyr_1794 | Siderophore-interacting protein. | Amino acid adenylation. | 0.687 |
Psyr_3927 | hemL | Psyr_3927 | Psyr_4342 | Siderophore-interacting protein. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.772 |
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