Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_4373 | Psyr_4374 | PAS. | Conserved hypothetical protein. | 0.867 |
Psyr_4373 | Psyr_4375 | PAS. | Peptidase A24A, prepilin type IV. | 0.520 |
Psyr_4373 | Psyr_4376 | PAS. | Regulatory protein, LuxR:Response regulator receiver. | 0.822 |
Psyr_4373 | Psyr_4390 | PAS. | Flp pilus assembly CpaB. | 0.511 |
Psyr_4373 | Psyr_4392 | PAS. | Pilus assembly protein CpaE. | 0.673 |
Psyr_4374 | Psyr_4373 | Conserved hypothetical protein. | PAS. | 0.867 |
Psyr_4374 | Psyr_4375 | Conserved hypothetical protein. | Peptidase A24A, prepilin type IV. | 0.676 |
Psyr_4374 | Psyr_4376 | Conserved hypothetical protein. | Regulatory protein, LuxR:Response regulator receiver. | 0.435 |
Psyr_4374 | Psyr_4389 | Conserved hypothetical protein. | Flp/Fap pilin component. | 0.440 |
Psyr_4374 | Psyr_4390 | Conserved hypothetical protein. | Flp pilus assembly CpaB. | 0.934 |
Psyr_4374 | Psyr_4391 | Conserved hypothetical protein. | Type II and III secretion system protein; Belongs to the bacterial secretin family. | 0.775 |
Psyr_4374 | Psyr_4392 | Conserved hypothetical protein. | Pilus assembly protein CpaE. | 0.946 |
Psyr_4374 | Psyr_4394 | Conserved hypothetical protein. | Type II secretion system protein. | 0.888 |
Psyr_4375 | Psyr_4373 | Peptidase A24A, prepilin type IV. | PAS. | 0.520 |
Psyr_4375 | Psyr_4374 | Peptidase A24A, prepilin type IV. | Conserved hypothetical protein. | 0.676 |
Psyr_4375 | Psyr_4376 | Peptidase A24A, prepilin type IV. | Regulatory protein, LuxR:Response regulator receiver. | 0.570 |
Psyr_4375 | Psyr_4389 | Peptidase A24A, prepilin type IV. | Flp/Fap pilin component. | 0.580 |
Psyr_4375 | Psyr_4390 | Peptidase A24A, prepilin type IV. | Flp pilus assembly CpaB. | 0.754 |
Psyr_4375 | Psyr_4391 | Peptidase A24A, prepilin type IV. | Type II and III secretion system protein; Belongs to the bacterial secretin family. | 0.471 |
Psyr_4375 | Psyr_4392 | Peptidase A24A, prepilin type IV. | Pilus assembly protein CpaE. | 0.561 |
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