STRINGSTRING
Psyr_4393 Psyr_4393 Psyr_4394 Psyr_4394 Psyr_4391 Psyr_4391 Psyr_4395 Psyr_4395 Psyr_4392 Psyr_4392 Psyr_4390 Psyr_4390 Psyr_4396 Psyr_4396 Psyr_4372 Psyr_4372 Psyr_4374 Psyr_4374 Psyr_4397 Psyr_4397 Psyr_4389 Psyr_4389
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4393Type II secretion system protein E. (418 aa)    
Predicted Functional Partners:
Psyr_4394
Type II secretion system protein.
 
  
 0.985
Psyr_4391
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.977
Psyr_4395
Type II secretion system protein.
 
  
 0.976
Psyr_4392
Pilus assembly protein CpaE.
 
  
 0.969
Psyr_4390
Flp pilus assembly CpaB.
 
  
 0.958
Psyr_4396
TPR repeat protein.
 
  
 0.852
Psyr_4372
Aspartate carbamoyltransferase.
 
  
 0.705
Psyr_4374
Conserved hypothetical protein.
 
  
 0.680
Psyr_4397
Conserved hypothetical protein.
  
    0.679
Psyr_4389
Flp/Fap pilin component.
  
  
 0.645
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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