STRINGSTRING
Psyr_4473 Psyr_4473 Psyr_3423 Psyr_3423 Psyr_3414 Psyr_3414 Psyr_3413 Psyr_3413 Psyr_3741 Psyr_3741 Psyr_4470 Psyr_4470 Psyr_3419 Psyr_3419 Psyr_4472 Psyr_4472 Psyr_4471 Psyr_4471 Psyr_3416 Psyr_3416 Psyr_4469 Psyr_4469
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4473OmpW. (228 aa)    
Predicted Functional Partners:
Psyr_3423
Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.808
Psyr_3414
Cytochrome C oxidase, mono-heme subunit/FixO.
 
    0.766
Psyr_3413
Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.682
Psyr_3741
Polyphosphate:AMP phosphotransferase.
   
    0.659
Psyr_4470
ABC transporter.
 
   
 0.646
Psyr_3419
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
    0.617
Psyr_4472
Lipoprotein, putative.
       0.567
Psyr_4471
Protein of unknown function DUF214.
       0.564
Psyr_3416
Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.500
Psyr_4469
Conserved hypothetical protein.
     
 0.496
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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