Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Psyr_0886 | speD | Psyr_0886 | Psyr_4575 | Response regulator receiver. | Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.606 |
| Psyr_1433 | Psyr_1621 | Psyr_1433 | Psyr_1621 | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Autoinducer synthesis protein. | 0.902 |
| Psyr_1433 | Psyr_2828 | Psyr_1433 | Psyr_2828 | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | C-5 cytosine-specific DNA methylase. | 0.900 |
| Psyr_1433 | Psyr_2843 | Psyr_1433 | Psyr_2843 | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | C-5 cytosine-specific DNA methylase. | 0.900 |
| Psyr_1433 | metK | Psyr_1433 | Psyr_4794 | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.914 |
| Psyr_1433 | speD | Psyr_1433 | Psyr_4575 | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.900 |
| Psyr_1621 | Psyr_1433 | Psyr_1621 | Psyr_1433 | Autoinducer synthesis protein. | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.902 |
| Psyr_1621 | Psyr_2828 | Psyr_1621 | Psyr_2828 | Autoinducer synthesis protein. | C-5 cytosine-specific DNA methylase. | 0.913 |
| Psyr_1621 | Psyr_2843 | Psyr_1621 | Psyr_2843 | Autoinducer synthesis protein. | C-5 cytosine-specific DNA methylase. | 0.914 |
| Psyr_1621 | metK | Psyr_1621 | Psyr_4794 | Autoinducer synthesis protein. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.902 |
| Psyr_1621 | speD | Psyr_1621 | Psyr_4575 | Autoinducer synthesis protein. | Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.900 |
| Psyr_1621 | speE | Psyr_1621 | Psyr_1864 | Autoinducer synthesis protein. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.900 |
| Psyr_2755 | Psyr_3068 | Psyr_2755 | Psyr_3068 | 2-nitropropane dioxygenase, NPD. | 2-nitropropane dioxygenase, NPD. | 0.926 |
| Psyr_2755 | speD | Psyr_2755 | Psyr_4575 | 2-nitropropane dioxygenase, NPD. | Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.685 |
| Psyr_2828 | Psyr_1433 | Psyr_2828 | Psyr_1433 | C-5 cytosine-specific DNA methylase. | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.900 |
| Psyr_2828 | Psyr_1621 | Psyr_2828 | Psyr_1621 | C-5 cytosine-specific DNA methylase. | Autoinducer synthesis protein. | 0.913 |
| Psyr_2828 | Psyr_2843 | Psyr_2828 | Psyr_2843 | C-5 cytosine-specific DNA methylase. | C-5 cytosine-specific DNA methylase. | 0.900 |
| Psyr_2828 | metK | Psyr_2828 | Psyr_4794 | C-5 cytosine-specific DNA methylase. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.914 |
| Psyr_2828 | speD | Psyr_2828 | Psyr_4575 | C-5 cytosine-specific DNA methylase. | Adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.900 |
| Psyr_2843 | Psyr_1433 | Psyr_2843 | Psyr_1433 | C-5 cytosine-specific DNA methylase. | C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.900 |
page 1 of 3