Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_4583 | Psyr_4584 | Glycoside hydrolase, family 19. | Protein of unknown function DUF144. | 0.730 |
Psyr_4583 | Psyr_4585 | Glycoside hydrolase, family 19. | Hypothetical protein. | 0.736 |
Psyr_4583 | Psyr_4586 | Glycoside hydrolase, family 19. | Tail protein, putative. | 0.592 |
Psyr_4583 | Psyr_4592 | Glycoside hydrolase, family 19. | Phage tail tape measure protein TP901, core region. | 0.575 |
Psyr_4583 | Psyr_4595 | Glycoside hydrolase, family 19. | Bacteriophage Mu tail sheath. | 0.534 |
Psyr_4583 | Psyr_4600 | Glycoside hydrolase, family 19. | Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.784 |
Psyr_4583 | Psyr_4602 | Glycoside hydrolase, family 19. | Hypothetical protein. | 0.413 |
Psyr_4583 | Psyr_4603 | Glycoside hydrolase, family 19. | Phage repressor protein, Serine peptidase, MEROPS family S24. | 0.409 |
Psyr_4583 | Psyr_4651 | Glycoside hydrolase, family 19. | S-type Pyocin; ISPpu14, transposase Orf3. | 0.432 |
Psyr_4584 | Psyr_4583 | Protein of unknown function DUF144. | Glycoside hydrolase, family 19. | 0.730 |
Psyr_4584 | Psyr_4585 | Protein of unknown function DUF144. | Hypothetical protein. | 0.950 |
Psyr_4584 | Psyr_4586 | Protein of unknown function DUF144. | Tail protein, putative. | 0.868 |
Psyr_4584 | Psyr_4592 | Protein of unknown function DUF144. | Phage tail tape measure protein TP901, core region. | 0.860 |
Psyr_4584 | Psyr_4595 | Protein of unknown function DUF144. | Bacteriophage Mu tail sheath. | 0.597 |
Psyr_4584 | Psyr_4600 | Protein of unknown function DUF144. | Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.439 |
Psyr_4584 | Psyr_4602 | Protein of unknown function DUF144. | Hypothetical protein. | 0.712 |
Psyr_4584 | Psyr_4603 | Protein of unknown function DUF144. | Phage repressor protein, Serine peptidase, MEROPS family S24. | 0.709 |
Psyr_4584 | Psyr_4651 | Protein of unknown function DUF144. | S-type Pyocin; ISPpu14, transposase Orf3. | 0.693 |
Psyr_4585 | Psyr_4583 | Hypothetical protein. | Glycoside hydrolase, family 19. | 0.736 |
Psyr_4585 | Psyr_4584 | Hypothetical protein. | Protein of unknown function DUF144. | 0.950 |
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