Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_1038 | Psyr_1040 | TonB-dependent siderophore receptor. | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.620 |
Psyr_1038 | Psyr_1107 | TonB-dependent siderophore receptor. | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | 0.592 |
Psyr_1038 | Psyr_2580 | TonB-dependent siderophore receptor. | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | 0.426 |
Psyr_1038 | Psyr_4729 | TonB-dependent siderophore receptor. | PepSY-associated TM helix. | 0.702 |
Psyr_1038 | Psyr_4730 | TonB-dependent siderophore receptor. | FecR protein. | 0.796 |
Psyr_1040 | Psyr_1038 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.620 |
Psyr_1040 | Psyr_1107 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | 0.891 |
Psyr_1040 | Psyr_1784 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.550 |
Psyr_1040 | Psyr_1943 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | 0.479 |
Psyr_1040 | Psyr_1961 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.596 |
Psyr_1040 | Psyr_1962 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.524 |
Psyr_1040 | Psyr_4729 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | PepSY-associated TM helix. | 0.536 |
Psyr_1040 | Psyr_4730 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | FecR protein. | 0.908 |
Psyr_1040 | Psyr_4731 | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma-70 region 2:Sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily. | 0.906 |
Psyr_1107 | Psyr_1038 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.592 |
Psyr_1107 | Psyr_1040 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.891 |
Psyr_1107 | Psyr_2580 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | 0.814 |
Psyr_1107 | Psyr_4729 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | PepSY-associated TM helix. | 0.504 |
Psyr_1107 | Psyr_4730 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | FecR protein. | 0.896 |
Psyr_1784 | Psyr_1040 | TonB-dependent siderophore receptor. | RNA polymerase sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. | 0.550 |
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