Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0721 | Psyr_4091 | Psyr_0721 | Psyr_4091 | Glycine oxidase. | 8-oxo-dGTPase. | 0.423 |
Psyr_0721 | Psyr_4741 | Psyr_0721 | Psyr_4741 | Glycine oxidase. | Sulfur carrier protein ThiS. | 0.576 |
Psyr_0721 | thiG | Psyr_0721 | Psyr_4740 | Glycine oxidase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.995 |
Psyr_0951 | Psyr_4091 | Psyr_0951 | Psyr_4091 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | 8-oxo-dGTPase. | 0.575 |
Psyr_0951 | Psyr_4340 | Psyr_0951 | Psyr_4340 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | Phosphomethylpyrimidine kinase, putative. | 0.716 |
Psyr_0951 | Psyr_4741 | Psyr_0951 | Psyr_4741 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | Sulfur carrier protein ThiS. | 0.830 |
Psyr_0951 | thiC | Psyr_0951 | Psyr_0544 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.680 |
Psyr_0951 | thiE | Psyr_0951 | Psyr_4341 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.683 |
Psyr_0951 | thiG | Psyr_0951 | Psyr_4740 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.868 |
Psyr_0951 | thiI | Psyr_0951 | Psyr_4816 | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | [ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.531 |
Psyr_1922 | Psyr_4091 | Psyr_1922 | Psyr_4091 | UBA/THIF-type NAD/FAD binding fold protein. | 8-oxo-dGTPase. | 0.575 |
Psyr_1922 | Psyr_4340 | Psyr_1922 | Psyr_4340 | UBA/THIF-type NAD/FAD binding fold protein. | Phosphomethylpyrimidine kinase, putative. | 0.671 |
Psyr_1922 | Psyr_4741 | Psyr_1922 | Psyr_4741 | UBA/THIF-type NAD/FAD binding fold protein. | Sulfur carrier protein ThiS. | 0.827 |
Psyr_1922 | thiC | Psyr_1922 | Psyr_0544 | UBA/THIF-type NAD/FAD binding fold protein. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.659 |
Psyr_1922 | thiE | Psyr_1922 | Psyr_4341 | UBA/THIF-type NAD/FAD binding fold protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.639 |
Psyr_1922 | thiG | Psyr_1922 | Psyr_4740 | UBA/THIF-type NAD/FAD binding fold protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.843 |
Psyr_1922 | thiI | Psyr_1922 | Psyr_4816 | UBA/THIF-type NAD/FAD binding fold protein. | [ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.531 |
Psyr_4091 | Psyr_0721 | Psyr_4091 | Psyr_0721 | 8-oxo-dGTPase. | Glycine oxidase. | 0.423 |
Psyr_4091 | Psyr_0951 | Psyr_4091 | Psyr_0951 | 8-oxo-dGTPase. | UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB. | 0.575 |
Psyr_4091 | Psyr_1922 | Psyr_4091 | Psyr_1922 | 8-oxo-dGTPase. | UBA/THIF-type NAD/FAD binding fold protein. | 0.575 |
page 1 of 4