STRINGSTRING
Psyr_4760 Psyr_4760 Psyr_0558 Psyr_0558 Psyr_4024 Psyr_4024 mutM mutM Psyr_0840 Psyr_0840 Psyr_0845 Psyr_0845 Psyr_1057 Psyr_1057 Psyr_1058 Psyr_1058 Psyr_4820 Psyr_4820 algL algL Psyr_1062 Psyr_1062
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4760Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
Psyr_0558
Conserved hypothetical protein.
  
     0.652
Psyr_4024
Conserved hypothetical protein.
  
     0.578
mutM
DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.577
Psyr_0840
Pentapeptide repeat protein.
  
     0.575
Psyr_0845
Conserved hypothetical protein.
  
     0.573
Psyr_1057
Alginate biosynthesis protein AlgX.
  
     0.562
Psyr_1058
Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis.
  
     0.534
Psyr_4820
Conserved hypothetical protein.
  
    0.534
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
     0.533
Psyr_1062
Alginate biosynthesis protein Alg8.
  
     0.533
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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