Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_1154 | Psyr_4763 | Psyr_1154 | Psyr_4763 | Copper/Zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | Peptidase C56, PfpI. | 0.590 |
Psyr_2411 | Psyr_2759 | Psyr_2411 | Psyr_2759 | Short-chain dehydrogenase/reductase SDR. | Eukaryotic-like DNA topoisomerase I. | 0.622 |
Psyr_2411 | Psyr_4763 | Psyr_2411 | Psyr_4763 | Short-chain dehydrogenase/reductase SDR. | Peptidase C56, PfpI. | 0.421 |
Psyr_2411 | nuoC | Psyr_2411 | Psyr_3199 | Short-chain dehydrogenase/reductase SDR. | NADH dehydrogenase subunit D / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.729 |
Psyr_2759 | Psyr_2411 | Psyr_2759 | Psyr_2411 | Eukaryotic-like DNA topoisomerase I. | Short-chain dehydrogenase/reductase SDR. | 0.622 |
Psyr_2759 | Psyr_4763 | Psyr_2759 | Psyr_4763 | Eukaryotic-like DNA topoisomerase I. | Peptidase C56, PfpI. | 0.425 |
Psyr_4762 | Psyr_4763 | Psyr_4762 | Psyr_4763 | Conserved hypothetical protein. | Peptidase C56, PfpI. | 0.549 |
Psyr_4762 | Psyr_4764 | Psyr_4762 | Psyr_4764 | Conserved hypothetical protein. | SAM-dependent methyltransferase. | 0.433 |
Psyr_4762 | mutM | Psyr_4762 | Psyr_4761 | Conserved hypothetical protein. | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.667 |
Psyr_4763 | Psyr_1154 | Psyr_4763 | Psyr_1154 | Peptidase C56, PfpI. | Copper/Zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.590 |
Psyr_4763 | Psyr_2411 | Psyr_4763 | Psyr_2411 | Peptidase C56, PfpI. | Short-chain dehydrogenase/reductase SDR. | 0.421 |
Psyr_4763 | Psyr_2759 | Psyr_4763 | Psyr_2759 | Peptidase C56, PfpI. | Eukaryotic-like DNA topoisomerase I. | 0.425 |
Psyr_4763 | Psyr_4762 | Psyr_4763 | Psyr_4762 | Peptidase C56, PfpI. | Conserved hypothetical protein. | 0.549 |
Psyr_4763 | Psyr_4764 | Psyr_4763 | Psyr_4764 | Peptidase C56, PfpI. | SAM-dependent methyltransferase. | 0.588 |
Psyr_4763 | Psyr_4943 | Psyr_4763 | Psyr_4943 | Peptidase C56, PfpI. | Peptidoglycan-binding LysM:Transport-associated. | 0.420 |
Psyr_4763 | mutM | Psyr_4763 | Psyr_4761 | Peptidase C56, PfpI. | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.506 |
Psyr_4763 | nuoC | Psyr_4763 | Psyr_3199 | Peptidase C56, PfpI. | NADH dehydrogenase subunit D / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.456 |
Psyr_4763 | rpsJ | Psyr_4763 | Psyr_4549 | Peptidase C56, PfpI. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.425 |
Psyr_4763 | tpx | Psyr_4763 | Psyr_2481 | Peptidase C56, PfpI. | Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. | 0.713 |
Psyr_4764 | Psyr_4762 | Psyr_4764 | Psyr_4762 | SAM-dependent methyltransferase. | Conserved hypothetical protein. | 0.433 |
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