Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_0531 | Psyr_0556 | LmbE-like protein. | Histidine kinase, HAMP region. | 0.411 |
Psyr_0531 | Psyr_0856 | LmbE-like protein. | Conserved hypothetical protein. | 0.738 |
Psyr_0531 | Psyr_1060 | LmbE-like protein. | Sel1-like repeat protein. | 0.759 |
Psyr_0531 | Psyr_1597 | LmbE-like protein. | Conserved hypothetical protein. | 0.767 |
Psyr_0531 | Psyr_2056 | LmbE-like protein. | CHAD. | 0.650 |
Psyr_0531 | Psyr_3284 | LmbE-like protein. | SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.532 |
Psyr_0531 | Psyr_3982 | LmbE-like protein. | 3-hydroxyacyl-CoA-acyl carrier protein transferase. | 0.409 |
Psyr_0531 | Psyr_4332 | LmbE-like protein. | Conserved hypothetical protein. | 0.628 |
Psyr_0531 | Psyr_4807 | LmbE-like protein. | Outer membrane porin. | 0.663 |
Psyr_0531 | Psyr_4849 | LmbE-like protein. | SdiA-regulated. | 0.734 |
Psyr_0556 | Psyr_0531 | Histidine kinase, HAMP region. | LmbE-like protein. | 0.411 |
Psyr_0556 | Psyr_0856 | Histidine kinase, HAMP region. | Conserved hypothetical protein. | 0.772 |
Psyr_0556 | Psyr_1060 | Histidine kinase, HAMP region. | Sel1-like repeat protein. | 0.750 |
Psyr_0556 | Psyr_1597 | Histidine kinase, HAMP region. | Conserved hypothetical protein. | 0.651 |
Psyr_0556 | Psyr_2056 | Histidine kinase, HAMP region. | CHAD. | 0.772 |
Psyr_0556 | Psyr_4332 | Histidine kinase, HAMP region. | Conserved hypothetical protein. | 0.557 |
Psyr_0556 | Psyr_4807 | Histidine kinase, HAMP region. | Outer membrane porin. | 0.615 |
Psyr_0856 | Psyr_0531 | Conserved hypothetical protein. | LmbE-like protein. | 0.738 |
Psyr_0856 | Psyr_0556 | Conserved hypothetical protein. | Histidine kinase, HAMP region. | 0.772 |
Psyr_0856 | Psyr_1060 | Conserved hypothetical protein. | Sel1-like repeat protein. | 0.657 |
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