Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0374 | Psyr_1794 | Psyr_0374 | Psyr_1794 | Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | Amino acid adenylation. | 0.495 |
Psyr_0374 | Psyr_4851 | Psyr_0374 | Psyr_4851 | Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal. | 0.550 |
Psyr_1007 | Psyr_1794 | Psyr_1007 | Psyr_1794 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Amino acid adenylation. | 0.602 |
Psyr_1007 | Psyr_4851 | Psyr_1007 | Psyr_4851 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal. | 0.506 |
Psyr_1007 | nuoC | Psyr_1007 | Psyr_3199 | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | NADH dehydrogenase subunit D / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.465 |
Psyr_1794 | Psyr_0374 | Psyr_1794 | Psyr_0374 | Amino acid adenylation. | Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | 0.495 |
Psyr_1794 | Psyr_1007 | Psyr_1794 | Psyr_1007 | Amino acid adenylation. | Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.602 |
Psyr_1794 | Psyr_1995 | Psyr_1794 | Psyr_1995 | Amino acid adenylation. | Electron transfer flavoprotein beta-subunit. | 0.486 |
Psyr_1794 | Psyr_1996 | Psyr_1794 | Psyr_1996 | Amino acid adenylation. | Electron transfer flavoprotein, alpha subunit. | 0.602 |
Psyr_1794 | Psyr_2173 | Psyr_1794 | Psyr_2173 | Amino acid adenylation. | Electron transfer flavoprotein, alpha subunit. | 0.602 |
Psyr_1794 | Psyr_2174 | Psyr_1794 | Psyr_2174 | Amino acid adenylation. | Electron transfer flavoprotein beta-subunit. | 0.486 |
Psyr_1794 | Psyr_4850 | Psyr_1794 | Psyr_4850 | Amino acid adenylation. | Fumarylacetoacetate (FAA) hydrolase. | 0.414 |
Psyr_1794 | Psyr_4851 | Psyr_1794 | Psyr_4851 | Amino acid adenylation. | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal. | 0.570 |
Psyr_1794 | Psyr_4852 | Psyr_1794 | Psyr_4852 | Amino acid adenylation. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.516 |
Psyr_1794 | nuoC | Psyr_1794 | Psyr_3199 | Amino acid adenylation. | NADH dehydrogenase subunit D / NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.996 |
Psyr_1995 | Psyr_1794 | Psyr_1995 | Psyr_1794 | Electron transfer flavoprotein beta-subunit. | Amino acid adenylation. | 0.486 |
Psyr_1995 | Psyr_1996 | Psyr_1995 | Psyr_1996 | Electron transfer flavoprotein beta-subunit. | Electron transfer flavoprotein, alpha subunit. | 0.993 |
Psyr_1995 | Psyr_2173 | Psyr_1995 | Psyr_2173 | Electron transfer flavoprotein beta-subunit. | Electron transfer flavoprotein, alpha subunit. | 0.971 |
Psyr_1995 | Psyr_4851 | Psyr_1995 | Psyr_4851 | Electron transfer flavoprotein beta-subunit. | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal. | 0.486 |
Psyr_1996 | Psyr_1794 | Psyr_1996 | Psyr_1794 | Electron transfer flavoprotein, alpha subunit. | Amino acid adenylation. | 0.602 |
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