STRINGSTRING
Psyr_4878 Psyr_4878 Psyr_0531 Psyr_0531 Psyr_0856 Psyr_0856 Psyr_2983 Psyr_2983 Psyr_0524 Psyr_0524 Psyr_4332 Psyr_4332 Psyr_4849 Psyr_4849 Psyr_1597 Psyr_1597 Psyr_2056 Psyr_2056 Psyr_3759 Psyr_3759 Psyr_0555 Psyr_0555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4878Outer membrane porin. (448 aa)    
Predicted Functional Partners:
Psyr_0531
LmbE-like protein.
  
     0.758
Psyr_0856
Conserved hypothetical protein.
  
     0.748
Psyr_2983
Conserved domain protein.
  
     0.738
Psyr_0524
Lipopolysaccharide kinase.
  
     0.728
Psyr_4332
Conserved hypothetical protein.
  
     0.716
Psyr_4849
SdiA-regulated.
  
     0.713
Psyr_1597
Conserved hypothetical protein.
  
     0.709
Psyr_2056
CHAD.
  
     0.687
Psyr_3759
Conserved hypothetical protein.
  
     0.680
Psyr_0555
Protein of unknown function DUF330.
  
     0.669
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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