Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GltB | Psyr_3021 | Psyr_0411 | Psyr_3021 | Glutamate synthase (NADPH) large subunit. | Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase. | 0.559 |
GltB | Psyr_4946 | Psyr_0411 | Psyr_4946 | Glutamate synthase (NADPH) large subunit. | Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.681 |
GltB | tuf | Psyr_0411 | Psyr_4550 | Glutamate synthase (NADPH) large subunit. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.547 |
Psyr_0049 | Psyr_1880 | Psyr_0049 | Psyr_1880 | Cytochrome c, class I:Iron permease FTR1. | Cytochrome c, class I. | 0.685 |
Psyr_0049 | Psyr_3414 | Psyr_0049 | Psyr_3414 | Cytochrome c, class I:Iron permease FTR1. | Cytochrome C oxidase, mono-heme subunit/FixO. | 0.820 |
Psyr_0049 | Psyr_4946 | Psyr_0049 | Psyr_4946 | Cytochrome c, class I:Iron permease FTR1. | Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.458 |
Psyr_0049 | tuf | Psyr_0049 | Psyr_4550 | Cytochrome c, class I:Iron permease FTR1. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.699 |
Psyr_1880 | Psyr_0049 | Psyr_1880 | Psyr_0049 | Cytochrome c, class I. | Cytochrome c, class I:Iron permease FTR1. | 0.685 |
Psyr_1880 | Psyr_3414 | Psyr_1880 | Psyr_3414 | Cytochrome c, class I. | Cytochrome C oxidase, mono-heme subunit/FixO. | 0.536 |
Psyr_1880 | Psyr_3416 | Psyr_1880 | Psyr_3416 | Cytochrome c, class I. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.830 |
Psyr_1880 | Psyr_4946 | Psyr_1880 | Psyr_4946 | Cytochrome c, class I. | Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.609 |
Psyr_1880 | Psyr_4947 | Psyr_1880 | Psyr_4947 | Cytochrome c, class I. | Conserved hypothetical protein. | 0.429 |
Psyr_1880 | tuf | Psyr_1880 | Psyr_4550 | Cytochrome c, class I. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.845 |
Psyr_3021 | GltB | Psyr_3021 | Psyr_0411 | Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase. | Glutamate synthase (NADPH) large subunit. | 0.559 |
Psyr_3021 | Psyr_3416 | Psyr_3021 | Psyr_3416 | Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.429 |
Psyr_3021 | Psyr_4946 | Psyr_3021 | Psyr_4946 | Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase. | Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.471 |
Psyr_3414 | Psyr_0049 | Psyr_3414 | Psyr_0049 | Cytochrome C oxidase, mono-heme subunit/FixO. | Cytochrome c, class I:Iron permease FTR1. | 0.820 |
Psyr_3414 | Psyr_1880 | Psyr_3414 | Psyr_1880 | Cytochrome C oxidase, mono-heme subunit/FixO. | Cytochrome c, class I. | 0.536 |
Psyr_3414 | Psyr_3416 | Psyr_3414 | Psyr_3416 | Cytochrome C oxidase, mono-heme subunit/FixO. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.999 |
Psyr_3414 | Psyr_4946 | Psyr_3414 | Psyr_4946 | Cytochrome C oxidase, mono-heme subunit/FixO. | Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.503 |
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