STRINGSTRING
Psyr_4988 Psyr_4988 Psyr_4989 Psyr_4989 Psyr_2040 Psyr_2040 bioD bioD Psyr_4985 Psyr_4985 Psyr_2320 Psyr_2320 Psyr_4870 Psyr_4870 Psyr_4983 Psyr_4983 Psyr_2610 Psyr_2610 Psyr_0687 Psyr_0687 Psyr_4871 Psyr_4871
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4988YD repeat protein. (480 aa)    
Predicted Functional Partners:
Psyr_4989
Hypothetical protein.
       0.773
Psyr_2040
YD repeat protein.
  
     0.721
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
      
 0.673
Psyr_4985
Conserved hypothetical protein.
  
 
 0.652
Psyr_2320
YD repeat protein; Methyl-accepting chemotaxis protein.
 
     0.632
Psyr_4870
Hypothetical protein.
 
     0.628
Psyr_4983
Rhs element Vgr protein.
 
  
 0.610
Psyr_2610
Chlorinating enzyme.
  
     0.601
Psyr_0687
Conserved hypothetical protein.
 
     0.598
Psyr_4871
Hypothetical protein.
 
     0.560
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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