Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_0029 | Psyr_1794 | Sulfatase. | Amino acid adenylation. | 0.422 |
Psyr_0029 | Psyr_5059 | Sulfatase. | GCN5-related N-acetyltransferase. | 0.513 |
Psyr_1794 | Psyr_0029 | Amino acid adenylation. | Sulfatase. | 0.422 |
Psyr_1794 | Psyr_2746 | Amino acid adenylation. | L-lysine 6-monooxygenase, putative. | 0.927 |
Psyr_1794 | Psyr_5059 | Amino acid adenylation. | GCN5-related N-acetyltransferase. | 0.426 |
Psyr_2746 | Psyr_1794 | L-lysine 6-monooxygenase, putative. | Amino acid adenylation. | 0.927 |
Psyr_2746 | Psyr_5059 | L-lysine 6-monooxygenase, putative. | GCN5-related N-acetyltransferase. | 0.405 |
Psyr_5055 | Psyr_5056 | YeeE/YedE. | Transcriptional regulator, GntR family. | 0.644 |
Psyr_5055 | Psyr_5057 | YeeE/YedE. | Negative transcriptional regulator. | 0.490 |
Psyr_5055 | Psyr_5058 | YeeE/YedE. | GCN5-related N-acetyltransferase. | 0.493 |
Psyr_5055 | Psyr_5059 | YeeE/YedE. | GCN5-related N-acetyltransferase. | 0.474 |
Psyr_5056 | Psyr_5055 | Transcriptional regulator, GntR family. | YeeE/YedE. | 0.644 |
Psyr_5056 | Psyr_5057 | Transcriptional regulator, GntR family. | Negative transcriptional regulator. | 0.592 |
Psyr_5056 | Psyr_5058 | Transcriptional regulator, GntR family. | GCN5-related N-acetyltransferase. | 0.592 |
Psyr_5056 | Psyr_5059 | Transcriptional regulator, GntR family. | GCN5-related N-acetyltransferase. | 0.620 |
Psyr_5057 | Psyr_5055 | Negative transcriptional regulator. | YeeE/YedE. | 0.490 |
Psyr_5057 | Psyr_5056 | Negative transcriptional regulator. | Transcriptional regulator, GntR family. | 0.592 |
Psyr_5057 | Psyr_5058 | Negative transcriptional regulator. | GCN5-related N-acetyltransferase. | 0.846 |
Psyr_5057 | Psyr_5059 | Negative transcriptional regulator. | GCN5-related N-acetyltransferase. | 0.804 |
Psyr_5058 | Psyr_5055 | GCN5-related N-acetyltransferase. | YeeE/YedE. | 0.493 |
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