STRINGSTRING
Psyr_5075 Psyr_5075 Psyr_5074 Psyr_5074 Psyr_5076 Psyr_5076 folE2 folE2 Psyr_2270 Psyr_2270 Psyr_3262 Psyr_3262 Psyr_5072 Psyr_5072 rpmE2 rpmE2 Psyr_5077 Psyr_5077 rpsN rpsN Psyr_4418 Psyr_4418
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_5075Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K. (402 aa)    
Predicted Functional Partners:
Psyr_5074
Conserved hypothetical protein.
 
  
 0.974
Psyr_5076
Conserved hypothetical protein.
  
  
 0.684
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.676
Psyr_2270
Transferase hexapeptide repeat protein.
  
  
 0.663
Psyr_3262
dnaK suppressor protein, putative.
  
  
 0.659
Psyr_5072
Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K.
 
  
0.621
rpmE2
LSU ribosomal protein L31P.
  
  
 0.492
Psyr_5077
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.489
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.477
Psyr_4418
Precorrin-6Y C5,15-methyltransferase (decarboxylating).
     
 0.468
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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