Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_1527 | Psyr_5130 | Psyr_1527 | Psyr_5130 | Conserved hypothetical protein. | Chromosome segregation ATPase. | 0.567 |
Psyr_1527 | rsmG | Psyr_1527 | Psyr_5131 | Conserved hypothetical protein. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.613 |
Psyr_5128 | Psyr_5129 | Psyr_5128 | Psyr_5129 | ATP synthase I chain. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.531 |
Psyr_5128 | Psyr_5130 | Psyr_5128 | Psyr_5130 | ATP synthase I chain. | Chromosome segregation ATPase. | 0.525 |
Psyr_5128 | atpB | Psyr_5128 | Psyr_5127 | ATP synthase I chain. | H+-transporting two-sector ATPase, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.972 |
Psyr_5128 | mnmG | Psyr_5128 | Psyr_5132 | ATP synthase I chain. | Glucose-inhibited division protein A subfamily; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.529 |
Psyr_5128 | rsmG | Psyr_5128 | Psyr_5131 | ATP synthase I chain. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.559 |
Psyr_5129 | Psyr_5128 | Psyr_5129 | Psyr_5128 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | ATP synthase I chain. | 0.531 |
Psyr_5129 | Psyr_5130 | Psyr_5129 | Psyr_5130 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Chromosome segregation ATPase. | 0.978 |
Psyr_5129 | atpB | Psyr_5129 | Psyr_5127 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | H+-transporting two-sector ATPase, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.513 |
Psyr_5129 | dnaA | Psyr_5129 | Psyr_0001 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.717 |
Psyr_5129 | ftsK | Psyr_5129 | Psyr_3179 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | DNA translocase FtsK; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the direction of DNA transl [...] | 0.819 |
Psyr_5129 | mnmG | Psyr_5129 | Psyr_5132 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Glucose-inhibited division protein A subfamily; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.789 |
Psyr_5129 | rsmG | Psyr_5129 | Psyr_5131 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.891 |
Psyr_5129 | xerC | Psyr_5129 | Psyr_0185 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.486 |
Psyr_5130 | Psyr_1527 | Psyr_5130 | Psyr_1527 | Chromosome segregation ATPase. | Conserved hypothetical protein. | 0.567 |
Psyr_5130 | Psyr_5128 | Psyr_5130 | Psyr_5128 | Chromosome segregation ATPase. | ATP synthase I chain. | 0.525 |
Psyr_5130 | Psyr_5129 | Psyr_5130 | Psyr_5129 | Chromosome segregation ATPase. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.978 |
Psyr_5130 | atpB | Psyr_5130 | Psyr_5127 | Chromosome segregation ATPase. | H+-transporting two-sector ATPase, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.507 |
Psyr_5130 | birA | Psyr_5130 | Psyr_4564 | Chromosome segregation ATPase. | Biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.505 |
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