STRINGSTRING
lig-4 lig-4 cku-70 cku-70 cku-80 cku-80 exo-1 exo-1 xpf-1 xpf-1 polq-1 polq-1 ercc-1 ercc-1 hsr-9 hsr-9 dna-2 dna-2 msh-6 msh-6 rad-51 rad-51
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lig-4LIGase. (741 aa)    
Predicted Functional Partners:
cku-70
Ku domain-containing protein.
   
 
 0.997
cku-80
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.996
exo-1
EXOnuclease.
  
 
 0.969
xpf-1
ERCC4 domain-containing protein.
   
 0.955
polq-1
DNA polymerase theta; DNA polymerase that promotes microhomology-mediated end- joining (MMEJ), an alternative non-homologous end-joining (NHEJ) machinery triggered in response to double-strand breaks in DNA. MMEJ is an error-prone repair pathway that produces deletions of sequences from the strand being repaired and promotes genomic rearrangements, such as telomere fusions. Required to prevent extensive loss of sequences near G-quadruplex (G4) DNA sites, which are prone to cause genome alterations, by generating deletions.
  
 
 0.952
ercc-1
ERCC (DNA excision repair protein) homolog.
   
 
 0.943
hsr-9
Protein hsr-9; May have a role in DNA double-strand break repair following gamma-irradiation.
   
 
 0.941
dna-2
Yeast DNA helicase/endonuclease family.
   
 
 0.940
msh-6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.933
rad-51
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA.
  
 
 0.924
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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