STRINGSTRING
A7J50_5756 A7J50_5756 A7J50_5757 A7J50_5757 A7J50_2873 A7J50_2873 A7J50_5758 A7J50_5758 A7J50_2550 A7J50_2550 A7J50_5755 A7J50_5755 A7J50_5759 A7J50_5759 A7J50_5751 A7J50_5751 A7J50_5761 A7J50_5761 A7J50_5760 A7J50_5760 A7J50_5762 A7J50_5762
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
A7J50_5756Type VI secretion protein TssB1; Pfam:pfam05591 Protein of unknown function (DUF770). (168 aa)    
Predicted Functional Partners:
A7J50_5757
Pfam:pfam05943 Protein of unknown function (DUF877).
 
 0.996
A7J50_2873
Type VI secretion protein; Pfam:pfam05943 Protein of unknown function (DUF877).
 
 0.975
A7J50_5758
Type VI secretion system effector Hcp1; Pfam:pfam05638 Protein of unknown function (DUF796).
 
 
 0.975
A7J50_2550
EvpB family type VI secretion protein; Pfam:pfam05943 Protein of unknown function (DUF877).
 
 0.974
A7J50_5755
Type VI secretion protein ImpA; Pfam:pfam06812 ImpA-related N-terminal.
 
  
 0.970
A7J50_5759
Type VI secretion protein TssE1; Pfam:pfam04965 Gene 25-like lysozyme.
 
  
 0.945
A7J50_5751
Type VI secretion protein; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.944
A7J50_5761
Type VI secretion protein; Pfam:pfam06996 Protein of unknown function (DUF1305).
 
  
 0.913
A7J50_5760
Type VI secretion system protein ImpG; Pfam:pfam05947 Bacterial protein of unknown function (DUF879).
 
  
 0.906
A7J50_5762
Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family.
 
  
 0.902
Your Current Organism:
Pseudomonas antarctica
NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35
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