STRINGSTRING
Smal_0009 Smal_0009 Smal_0010 Smal_0010 Smal_0011 Smal_0011 Smal_3412 Smal_3412 Smal_0008 Smal_0008 Smal_1397 Smal_1397 tolR tolR Smal_2198 Smal_2198 Smal_3309 Smal_3309 Smal_2903 Smal_2903 Smal_2536 Smal_2536
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_0009PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC0009 biopolymer transport ExbB protein. (253 aa)    
Predicted Functional Partners:
Smal_0010
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcb:XC_0010 biopolymer transport ExbD1 protein.
 
 
 0.977
Smal_0011
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xom:XOO_0011 biopolymer transport ExbD2 protein.
 
 
 0.974
Smal_3412
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV0012 biopolymer transport ExbD protein.
 
 
 0.937
Smal_0008
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC0008 TonB protein.
 
 
 0.934
Smal_1397
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV2253 biopolymer transport ExbD protein.
 
 
 0.929
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.926
Smal_2198
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_2378 ExbD transport protein.
 
 
 0.917
Smal_3309
TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpe:RPE_3145 biopolymer transport protein ExbD/TolR.
 
 
 0.895
Smal_2903
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC2774 TonB-like protein.
 
 
 0.883
Smal_2536
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC1652 hypothetical protein.
 
 
 0.834
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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